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Welcome to Tardis's documentation!
==================================

Changelog
=========

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3.8.0 (16.07.2020)
  + Torque is being deprecated
  + added documentation for the new rm SLURM
  + examples of how to use GPUs

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3.7.0 (03.04.2020)
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  + introduce the /data folder
  + added section about singularity
  + finally documented environment modules

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3.6.2 (17.12.2019)
  + new memory defaults for compiled spm12

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3.6.1 (19.09.2019)
  + added minimal howto for Conda
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  + updated SPM12 section (env modules)

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3.6 (02.07.2019)
  + added section about Torque Dependencies

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3.5 (07.07.2018)
  + added section about (non-)efficient saving of objects in Matlab

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3.4.5 (09.02.2018)
  + major changes with ASHS

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3.4.4 (19.12. 2017)
  + updated Tardis specs
  + added FSL feat example
  + added new section for useful \*nix programs (tmux)

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3.4.3 (22.12. 2016)
  + updated ashs chunk submit script

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3.4.2 (11.11. 2016)
  + added python section

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3.4.1 (18.10. 2016)
  + added fieldtrip compilation notes

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3.4 (19.09. 2016)
  + added matlab section

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3.3 (15.08. 2016)
  + added minimal example for fsl fix
  + fixed a typo with the `qdel` example

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3.2 (18.07. 2016)
  + restructuring and some typos (thanks for the feedback!)

3.1 (01.07 2016)
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  + added documentation for Freesurfer and ASHS
  + fixed some typos

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3.0 (24.10 2015)
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  + We switched to the `Sphinx <http://sphinx-doc.org/>`_ documentation system!

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List of Contents
================

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.. toctree::
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   :maxdepth: 1
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   :caption: General
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   introduction/index
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   introduction/login
   introduction/rules
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   introduction/data
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.. toctree::
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   :maxdepth: 3
   :caption: Resource Manager
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   rm/general
   rm/slurm
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   rm/torque
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.. toctree::
   :maxdepth: 1
   :caption: Environment

   environment/modules
   environment/singularity
   environment/unix

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.. toctree::
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   :maxdepth: 1
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   :caption: Software

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   software/ants
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   software/ashs
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   software/freesurfer
   software/fsl
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   software/matlab
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   software/python
   software/r
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.. toctree::
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   :maxdepth: 1
   :caption: Other
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   other/faq