Commit 2a45dcf7 authored by Michael Krause's avatar Michael Krause 🎉
Browse files

fsl_fix: add minimal example

parent b540f142
......@@ -4,6 +4,10 @@ Welcome to Tardis's documentation!
Changelog
=========
3.3 (15.08. 2016)
+ added minimal example for fsl fix
+ fixed a typo with the `qdel` example
3.2 (18.07. 2016)
+ restructuring and some typos (thanks for the feedback!)
......
FSL
===
FIX
---
We have set up a running version of [FSL
Fix](http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FIX). Currently it is not using
FSL's internal qsub so it only makes sense to parallelize over a number of
subjects. Example:
.. code-block:: bash
for icadir in *ica ; do
echo "module load fsl_fix" >> tmpjob
echo "source /etc/fsl/5.0/fsl.sh" >> tmpjob
echo "fix ${icadir} /opt/software/fix/1.06/training_files/Standard.RData 20" >> tmpjob
qsub -N fix_foobar -j oe -d. tmpjob
rm -f tmjob
done
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment