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Michael Krause
tardis-doc
Commits
efad9306
Commit
efad9306
authored
Jul 16, 2020
by
Michael Krause
🎉
Browse files
Fix minor warnings/issue/typos
parent
7a56f049
Changes
7
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introduction/index.rst
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efad9306
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@@ -51,7 +51,7 @@ might want to use your machine as well. But most importantly it is **slow**.
With the Tardis you can login from your laptop or workstation with SSH (see:
:doc:`login`) to a single head node called ``tardis``. On that node users can
prepare and test their code and analysis and then submit it to a queue (see:
:
doc:`../pbs/
torque`). Jobs will then **eventually** be submitted to one of the
:
ref:`
torque`). Jobs will then **eventually** be submitted to one of the
computing nodes to get a guaranteed set of processing resources. Afterwards
users can collect the results and copy them back to the file servers.
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introduction/login.rst
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@@ -94,7 +94,7 @@ Macfusion Configuration
Using sshfs directly
Alternatively, you can simply run sshfs in the command line to mount the remote side:
.. code-block::
bash
.. code-block::
lip-osx-001106:~ krause$ mkdir -p /Users/krause/Volumes/tardis # run this only once
lip-osx-001106:~ krause$ sshfs krause@tardis.mpib-berlin.mpg.de: /Users/krause/Volumes/tardis/
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rm/general.rst
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@@ -25,7 +25,7 @@ Queues/Partitions
The RM usually manages a number of queues (they are called partitions for
Slurm) and they can hold thousands of jobs that are subject to execution. Once
you prepared a Job (:ref:`torque_jobs`, :ref:`slurm
/slurm
_jobs`) you can place them
you prepared a Job (:ref:`torque_jobs`, :ref:`slurm_jobs`) you can place them
inside a queue. All jobs of all users are going to the same central
queue(s):
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rm/torque.rst
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.. _torque:
Torque **(End-Of-Life)**
========================
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@@ -12,4 +14,4 @@ became incompatible to some of the more recent feature of Torque.
.. include:: torque/commands.rst
.. include:: torque/resources.rst
.. _
T
orque: http://www.adaptivecomputing.com/products/open-source/torque
.. _
t
orque: http://www.adaptivecomputing.com/products/open-source/torque
rm/torque/commands.rst
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@@ -162,7 +162,7 @@ Examples:
krause@master:~> $ qdel all
qdel: cannot find any jobs to delete
``qdel`` cannot handle wildcards to remove jobs matching the name 'project-*',
``qdel`` cannot handle wildcards to remove jobs matching the name 'project-
\
*',
but you can use grep and xargs:
.. code-block:: bash
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rm/torque/jobs.rst
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efad9306
.. _jobs:
..
_torque
_jobs:
Example Jobs
------------
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rm/torque/resources.rst
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@@ -63,7 +63,7 @@ pbs_resources``.
+ **b** defines the beginning of a job run as event
+ **e** send an e-mail when the job has finished
``#PBS -W depend=afterok:
\
Job-Id``
``#PBS -W depend=afterok:Job-Id``
This will add a dependency to the current job. It will only be started or
tagged as startable when another job with id *Job-Id* finished
successfully.
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