Commit 3dcc9863 authored by Michael Krause's avatar Michael Krause 🎉
Browse files

Fix broken links

parent 596429ef
...@@ -93,7 +93,7 @@ User homes ...@@ -93,7 +93,7 @@ User homes
The new canonical location for user homes is :file:`/data/home/`. All previous The new canonical location for user homes is :file:`/data/home/`. All previous
locations such as :file:`/home/mpib` or :file:`/home/beegfs` are now linking to locations such as :file:`/home/mpib` or :file:`/home/beegfs` are now linking to
that folder and can still be used in your scripts. The storage is provided by that folder and can still be used in your scripts. The storage is provided by
a small cluster of BeegFS servers and there **is no backup**. a small cluster of BeeGFS servers and there **is no backup**.
Data will be transparently compressed, so there is no need to zip files Data will be transparently compressed, so there is no need to zip files
excessively, as long as they stay in your homes. excessively, as long as they stay in your homes.
......
...@@ -53,9 +53,10 @@ might want to use your machine as well. But most importantly it is **slow**. ...@@ -53,9 +53,10 @@ might want to use your machine as well. But most importantly it is **slow**.
With the Tardis you can login from your laptop or workstation with SSH (see: With the Tardis you can login from your laptop or workstation with SSH (see:
:doc:`login`) to a single head node called ``tardis``. On that node users can :doc:`login`) to a single head node called ``tardis``. On that node users can
prepare and test their code and analysis and then submit it to a queue (see: prepare and test their code and analysis and then submit it to a queue (see:
:ref:`torque`). Jobs will then **eventually** be submitted to one of the :ref:`Resource manager <rm_general>`). Jobs will then **eventually** be
computing nodes to get a guaranteed set of processing resources. Afterwards submitted to one of the computing nodes to get a guaranteed set of processing
users can collect the results and copy them back to the file servers. resources. Afterwards users can collect the results and copy them back to the
file servers.
.. image:: ../img/WF-par.svg .. image:: ../img/WF-par.svg
:width: 80% :width: 80%
...@@ -10,7 +10,7 @@ parallel. ...@@ -10,7 +10,7 @@ parallel.
Example Example
------- -------
The simple subject loop shown in section :ref:`job_wrappers` and can be adapted like this: The simple subject loop shown in section :ref:`slurm_job_wrappers` and can be adapted like this:
.. code-block:: bash .. code-block:: bash
......
...@@ -380,7 +380,7 @@ connected to the internal structure of HDF5 objects. Saving a struct with ...@@ -380,7 +380,7 @@ connected to the internal structure of HDF5 objects. Saving a struct with
multiple, nested objects of different types (think string annotations, integer multiple, nested objects of different types (think string annotations, integer
arrays and float matrices) is much more tedious. Timothy E. Holy wrote arrays and float matrices) is much more tedious. Timothy E. Holy wrote
a wrapper script, that kind of automatically creates the necessary structures a wrapper script, that kind of automatically creates the necessary structures
and published the function :program:`savefast` on `Matlab's filexchange`_. It and published the function :program:`savefast` on `Matlab's fileexchange`_. It
has a similar interface to the original save and can be used as a drop-in has a similar interface to the original save and can be used as a drop-in
replacement in many cases. You need to add the function to your search path of replacement in many cases. You need to add the function to your search path of
course. course.
......
initial
---
download spm/cat
set path
make_standalone()
update
---
spm_update()
cat update by download/extract
make_standalone()
run
---
path/to/run_spm12.sh path/to/matlab/_version batch batch_filename
test
---
echo "matlabbatch{1}.cfg_basicio.file_dir.dir_ops.cfg_cd.dir = {'.'};" > testbatch
path/to/run_spm12.sh /opt/matlab/SOME_VERSION batch testbatch
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