Commit 3dcc9863 authored by Michael Krause's avatar Michael Krause 🎉
Browse files

Fix broken links

parent 596429ef
......@@ -93,7 +93,7 @@ User homes
The new canonical location for user homes is :file:`/data/home/`. All previous
locations such as :file:`/home/mpib` or :file:`/home/beegfs` are now linking to
that folder and can still be used in your scripts. The storage is provided by
a small cluster of BeegFS servers and there **is no backup**.
a small cluster of BeeGFS servers and there **is no backup**.
Data will be transparently compressed, so there is no need to zip files
excessively, as long as they stay in your homes.
......
......@@ -53,9 +53,10 @@ might want to use your machine as well. But most importantly it is **slow**.
With the Tardis you can login from your laptop or workstation with SSH (see:
:doc:`login`) to a single head node called ``tardis``. On that node users can
prepare and test their code and analysis and then submit it to a queue (see:
:ref:`torque`). Jobs will then **eventually** be submitted to one of the
computing nodes to get a guaranteed set of processing resources. Afterwards
users can collect the results and copy them back to the file servers.
:ref:`Resource manager <rm_general>`). Jobs will then **eventually** be
submitted to one of the computing nodes to get a guaranteed set of processing
resources. Afterwards users can collect the results and copy them back to the
file servers.
.. image:: ../img/WF-par.svg
:width: 80%
......@@ -10,7 +10,7 @@ parallel.
Example
-------
The simple subject loop shown in section :ref:`job_wrappers` and can be adapted like this:
The simple subject loop shown in section :ref:`slurm_job_wrappers` and can be adapted like this:
.. code-block:: bash
......
......@@ -380,7 +380,7 @@ connected to the internal structure of HDF5 objects. Saving a struct with
multiple, nested objects of different types (think string annotations, integer
arrays and float matrices) is much more tedious. Timothy E. Holy wrote
a wrapper script, that kind of automatically creates the necessary structures
and published the function :program:`savefast` on `Matlab's filexchange`_. It
and published the function :program:`savefast` on `Matlab's fileexchange`_. It
has a similar interface to the original save and can be used as a drop-in
replacement in many cases. You need to add the function to your search path of
course.
......
initial
---
download spm/cat
set path
make_standalone()
update
---
spm_update()
cat update by download/extract
make_standalone()
run
---
path/to/run_spm12.sh path/to/matlab/_version batch batch_filename
test
---
echo "matlabbatch{1}.cfg_basicio.file_dir.dir_ops.cfg_cd.dir = {'.'};" > testbatch
path/to/run_spm12.sh /opt/matlab/SOME_VERSION batch testbatch
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