updates for final EEG acquision YA; timestamp 170922

.gitignore

@@ -14,7 +14,9 @@
 **/tmp*
 **/study_information
 **/raw
+**/old
 *.mat
+*.zip
 *.m~
 *.xlsx
 *.png

StateSwitch/StateSwitch_settingsTask.m

 function setup = StateSwitch_settingsTask(setup)
     % settings for task eeg
-    setup.DEBUG                     = 0; 
-    setup.opacity                   = .4; 
+    setup.DEBUG                     = 1; 
+    setup.opacity                   = 1; 
     setup.keyB                      = 1;
-    setup.ET.useET                  = 1;
-    setup.EEG.useEEG                = 1;
+    setup.ET.useET                  = 0;
+    setup.EEG.useEEG                = 0;
     setup.EEG.DIO.parallelTrigger   = 1;
     setup.EEG.DIO.protocolDynamic   = 1;
     setup.EEG.waitTrigEnc           = .005; % wait 5 ms to ensure encoding of trigger

StateSwitch/StateSwitch_trialPresentation_dynamic_170911.m

@@ -277,7 +277,7 @@ if expInfo.durPostCueFix > 0
     
     % ######### PostFixCueOnset ########
     if strcmp(expInfo.timing, 'absolute')
-        flipWhen = Timing.RunInitiation+(indBlock)*expInfo.durBlockOnset+(indBlock-1)*expInfo.blockLengthDim*expInfo.trialDuration.all+(indBlock-1)*expInfo.durReward+(indTrial-1)*expInfo.trialDuration.all+expInfo.trialDuration.Cue-(ifi/2);
+        flipWhen = Timing.RunInitiation+(indBlock)*expInfo.durBlockOnset+(indBlock-1)*expInfo.blockLengthDim*expInfo.trialDuration.all+(indBlock-1)*expInfo.durReward+(indTrial-1)*expInfo.trialDuration.all+expInfo.trialDuration.FixCue-(ifi/2);
     else
         flipWhen = Timing.FixCueOnset+expInfo.durFixCue-(ifi/2);
     end

TaskPipeline_v15_eeg.m

+ % Main script for the state switching EEG experiment (September 2017)
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+%% enter subject ID & task variant %%
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+prompt = {'Enter subject ID:','Enter paradigm (dynamic/words/visual):'};
+dlg_title = 'StateSwitch Input';
+num_lines = 1;
+defaultans = {'0000','dynamic'};
+answer = inputdlg(prompt,dlg_title,num_lines,defaultans);
+
+setup.subj = answer{1}; % task materials: 'words', 'visual', 'dynamic'
+setup.task = answer{2};
+
+disp(['Continuing with subject ',setup.subj, ' and ', setup.task, ' task version.']);
+
+%% add required paths
+
+if ispc 
+    pn.root = ['C:',filesep,'Users',filesep,'eeg',filesep,'Desktop',filesep,'StateSwitchEEG',filesep,'C_Paradigm',filesep];
+else
+    pn.root = [filesep,'Volumes',filesep,'LNDG',filesep,'stateSwitch',filesep,'B_paradigm',filesep,'StateSwitchEEG',filesep,'C_Paradigm_170922',filesep];
+end
+
+pn.CB       = [pn.root, 'checker',filesep]; addpath(pn.CB);
+pn.MAT      = [pn.root, 'dotsx',filesep]; addpath(pn.MAT);
+pn.SS       = [pn.root, 'StateSwitch',filesep]; addpath(pn.SS);
+pn.Stroop   = [pn.root, 'Stroop',filesep]; addpath(pn.Stroop);
+addpath(genpath([pn.root, 'functions',filesep]));
+addpath(genpath([pn.root, 'helper',filesep]));
+if ispc
+    addpath(['C:',filesep,'toolbox',filesep,'Psychtoolbox']); % PTB 3.0.11
+else
+    addpath(genpath('/Users/Shared/Psychtoolbox/')); % PTB 3.0.13 (160606)
+end
+
+%% create results directory
+
+setup.subjectsPath = [pn.root,filesep,'data',filesep, setup.subj '_' datestr(now, 'yymmdd_HHMM') filesep]; mkdir(setup.subjectsPath);
+
+diary([setup.subjectsPath, setup.subj, '_ptbnotes_setup.txt']); version
+
+%% set up PTB
+
+if ispc
+    Screen('Preference', 'SkipSyncTests', 0);
+else 
+    Screen('Preference', 'SkipSyncTests', 1);
+    oldLevel = Screen('Preference', 'Verbosity', 4); % output debugging info
+    PsychDebugWindowConfiguration(0,0.3)
+    % setenv('PSYCH_ALLOW_DANGEROUS', '1');
+end
+
+%% resting state
+
+questdlg('Ready for Resting State?', 'Rest','YES!','YES!');
+
+setup = StateSwitch_settingsResting(setup);
+StateSwitch_resting_170829(setup)
+
+%% perform Stroop task
+
+questdlg('Ready for Stroop?', 'Stroop','YES!','YES!');
+
+setup = StateSwitch_settingsStroop(setup);
+expInfo.StroopRun = '1';
+Stroop_170907(setup, expInfo)
+
+%% practice task
+
+questdlg('Ready for Switch Practice?', 'Practice','YES!','YES!');
+
+cd(pn.root);
+setup = StateSwitch_settingsTaskPractice(setup);
+expInfo = []; expInfo = eval(['StateSwitch_createExpInfo_',setup.task,'_170922']);
+StateSwitch_practice_170922(expInfo, setup);
+
+%% run state switching task
+
+questdlg('Ready for Switch Task?', 'Task','YES!','YES!');
+
+cd(pn.root);
+setup = StateSwitch_settingsTask(setup);
+expInfo = []; expInfo = eval(['StateSwitch_createExpInfo_',setup.task,'_170922']);
+StateSwitch_experiment_170911(expInfo, setup)
+
+%% perform second Stroop task
+
+questdlg('Ready for Second Stroop?', 'Stroop 2','YES!','YES!');
+
+setup = StateSwitch_settingsStroop(setup);
+expInfo.StroopRun = '2';
+Stroop_170907(setup, expInfo)